[Please Help.] Lighting Bug in Bukkit Build: #2359 V1.3.2-R0.2

I had this issue before and it was fixed when I got rid of the plugin "nolag." Now this server is glitched and I have no clue how to fix it without starting over. I took out all of the plugins and started it and I get the same result as seen in the image below. The problem is temporarily fixed by using a torch and walking over the glitched blocks but when the server is restarted the issue remains.

The run.bat:
"@echo OFF
if /I "%PROCESSOR_ARCHITECTURE:~-2%"=="64" "%C:\Program Files\Java\jre7\bin%\java.exe" -Xincgc -Xmx1536M -jar "craftbukkit.jar"
if /I "%PROCESSOR_ARCHITECTURE:~-2%"=="86" java -Xincgc -Xmx1536M -jar "craftbukkit.jar"
pause"

Server System Specs:
Computer: eMachine - EL1358
Processor: AMD Athlon(tm) II X2 260 Processor 3.20 GHz
Ram: 4GB (3.75GB Usable)
OS: Windows 7 Home Premium SP1 (64-Bit)
Java 7 Update 7 32-Bit and 64-Bit Installed (Server uses the 64-Bit I believe)
Minecraft 1.3.2
Bukkit Build: #2359 V1.3.2-R0.2

 

Bump: Still haven't found a fix.