Permission Plugins Wont Work

So I Created A Server And Installed Plugins. I Install So Many Permission
Plugins İnculding LuckPerms exPerms
StrongPerms SARanks. they wont work. here is list of my other plugins

-Dynmap
-SaberFactions
-Essensials
-Vault
-GoldenCrates
-HubThat
-Holographic Display
-AuthMe (for my website)
-MultiverseCore
-NexEngine
-ProtocolLIB
-Sımple TPA
-Skın Restorer
-WorldEdit

-online mode is true

for some reason my permissions.yml folder is empty

 

I use SaRanks. and for somereason it doesent saves permissions to permissions.yml that might be the problem. None of the plugins work inculidg luckperms, experms, strongperms

 

oh my fault it did crate files and i can see the permission i gave, but for some reason i joined with my alt and gave him Helper rank i gave minecraft.command.kick permissiion to helper but it wont work it says (you dont have acces to use this command)

Code:

Helper:
    name: Helper
    permissions:
    - minecraft.command.ban
    - minecraft.command.kick
    - goldencrates.open.iron_crate
    - goldencrates.open.test
    - kick
    prefix: '§7[§bHelper§7] '
    suffix: ': '
    default: false

EDIT by Moderator: merged posts, please use the edit button instead of double posting.

 

i have found the problem Vault was causing this. Is There Anyway That I Can Dısable Vault For Checking Permisions?

 

well i cant show proof sicne the thing i did was i deleted all plugins and added them one by one, when i added Vault which also can be used as a permission plugin and with the fact that it doesent supports SaRanks / LuckPerms it broke it