http://dev.bukkit.org/server-mods/gods/#w-configuration There is a spot it says you need to make a command for it.
Oh thanks I know that but it turns out it glitched and didn't take my settings Still not working!!!! how could I change the gods.yml file EDIT by Moderator: merged posts, please use the edit button instead of double posting.
I don't see anywhere that they list the gods.yml file on their dev page or on a github so you'd have to post it here in a pastebin or post an issue on their dev page.