Permissions dont work for all commands

Hello,
I have recently installed PermissionsEx and i have occured some issues.
Please note that im completly new at this because this is my first time hosting
a server so i do not have much experience.
I have installed factions plugin together with iconomy and much more.
But the problem is that it says there to add permissions nodes to groups that i want
to be able to use the commands.
I did not add any permission nodes and they can still use the commands without
being a operator.
What is the issue? my groups and everything is sorted fine but
they can acess commands even though the group has not the permission nodes??
I would really appreciate a fast conversation such as facebook,messenger live or even forums.
If you need my configuration file or anything just leave a comment.
Thank you.

 

did you forget to set any of your permissions groups to default: false?

BTW, im not sure but im probably wrong but maybe you have to actually put permissions for it to recognize the permissions system???

Try switching to groupmanager (wut i use) i find it the easiest but u can do what u like ^^

 

May you post your Permissions YML Configuration please. Just copy and paste it.

 

groups:
Admins:
default: false
permissions:
- bukkit.command.ban.player
- bukkit.command.gamemode
- bukkit.command.save.perform
- bukkit.command.kick
- bukkit.command.time.set
- bukkit.command.teleport
- iconomy.holdings
- iconomy.payment
- iconomy.holdings.others
- iconomy.accounts.take
- iconomy.accounts.set
- jail.command.jail
- jail.command.unjail
- jail.command.jaillist
- jail.command.jaillistcells
- teleport.tp
- teleport.tphere
- lwc.admin
prefix: '&c[Admins]&f'
FreshMeat:
default: true
permissions: null
prefix: '&e[FreshMeat]&f'
Shepherd:
default: false
permissions:
- iconomy.holdings
- iconomy.payment
- iconomy.holdings.others
prefix: '&3[Shepherd]&f'
Lord:
default: false
permissions:
- mobdisguise.zombie
prefix: '&2[Lord]&f'
Vip:
default: false
permissions:
- mobdisguise.creeper
- mobdisguise.chicken
prefix: '&5[Vip]&f'