GroupManager is getting overwritten by what Permissions?!

Hello! I wanted just ask if anyone could help me, due to the problem that i configured my GroupManager, no errors or such, but it in-game, nothing is working that is permissions, can anyone help me please? Btw, ignore the other plugin errors, they didnt do anything that hurts in-game or such.

Code:

02:42 PM [INFO] [Pail] Setting up window...
02:42 PM [INFO] [Pail] Pail 0.7.5 Enabled
02:42 PM [INFO] Preparing level "World One"
02:42 PM [INFO] Default game type: 0
02:42 PM [INFO] Preparing start region for level 0 (Seed: -1427836497458623649)
02:42 PM [INFO] Preparing start region for level 1 (Seed: -1427836497458623649)
02:42 PM [INFO] Preparing start region for level 2 (Seed: -1427836497458623649)
02:42 PM [INFO] Preparing spawn area: 16%
02:42 PM [INFO] CraftBukkitUpToDate version 2.7.1 is enabled!
02:42 PM [INFO] Bukkit version format changed. Version not checked.
02:42 PM [INFO] Loaded Essentials build 2.6.5 by: Zenexer, ementalo, Aelux, Brettflan, KimKandor, snowleo, ceulemans, Xeology, KHobbits
02:42 PM [INFO] Essentials: Using config based permissions. Enable superperms in config.
02:42 PM [INFO] Loaded EssentialsChat build 2.6.5 by: essentials team
02:42 PM [INFO] GroupManager - INFO - World Found: world
02:42 PM [INFO] GroupManager - INFO - World Found: world one
02:42 PM [INFO] GroupManager - INFO - World Found: World One_nether
02:42 PM [INFO] GroupManager - INFO - World Found: World One_the_end
02:42 PM [INFO] GroupManager - INFO - Superperms support enabled.
02:42 PM [INFO] GroupManager - INFO - Scheduled Data Saving is set for every 10 minutes!
02:42 PM [INFO] GroupManager - INFO - Backups will be retained for 24 hours!
02:42 PM [INFO] GroupManager version 1.5 (Phoenix) is enabled!
02:42 PM [INFO] Essentials: Using GroupManager based permissions.
02:42 PM [INFO] Loaded EssentialsProtect build 2.6.5 by: essentials team
02:42 PM [INFO] Loaded EssentialsSpawn build 2.6.5 by: essentials team
02:42 PM [INFO] [EXP PLUGIN] v1.2 enabled
02:42 PM [INFO] [EXP PLUGIN] Developed by Jimbobt123
02:42 PM [INFO] [FoundBoxx] No custom permission plugins found, using original permissions.
02:42 PM [INFO] [FoundBoxx v1.5.2.3] Enabled.
02:42 PM [INFO] PailPlus v0.2 beta enabled
02:42 PM [INFO] [Ptweaks] Ram logger v1.0 enabled.
02:42 PM [INFO] [Ptweaks] Version 1.6.1 enabled.
02:42 PM [INFO] [PTweaks] Set auto save interval to 57000 in world "World One"
02:42 PM [INFO] [PTweaks] Set auto save interval to 57000 in world "World One_nether"
02:42 PM [INFO] [PTweaks] Set auto save interval to 57000 in world "World One_the_end"
02:42 PM [INFO] [PTweaks] Chunk Life Time: 300000ms
02:42 PM [INFO] [PTweaks] Chunk Prune Time: 5000ms
02:42 PM [INFO] lifetime
02:42 PM [INFO] prune
02:42 PM [INFO] enable
02:42 PM [INFO] [PTweaks] Monster Limit set to 2500
02:42 PM [INFO] CButD: CraftBukkit is Outdate, try to download new version
02:42 PM [INFO] [Regios] Spout not detected. No Spout support.
02:42 PM [INFO] [Regios] Checking directories.
02:42 PM [INFO] [Regios] Deleting directory @_root/plugins/Regios/Dependancies
02:42 PM [INFO] [Regios] Directory check completed.
02:42 PM [INFO] [Regios] Checking configuration files.
02:42 PM [INFO] [Regios] Configuration check completed.
02:42 PM [INFO] [Regios] Loading configuration files.
02:42 PM [INFO] [Regios] Loaded default region configuation file.
02:42 PM [INFO] [Regios] No economy preset specified in config.
02:42 PM [INFO] [Regios] Loading world configuration for world : World One
02:42 PM [INFO] [Regios] Loading world configuration for world : World One_nether
02:42 PM [INFO] [Regios] Loading world configuration for world : World One_the_end
02:42 PM [INFO] [Regios] Configuration files loaded successfully!
02:42 PM [INFO] [Regios] Loading [1] Regions.
02:42 PM [INFO] [Regios] Permissions support enabled!
02:42 PM [INFO] [Regios] Starting scheduler task...
02:42 PM [INFO] [Regios] Scheduler task initiated!
02:42 PM [INFO] [Regios] Regios version 4.0.71 enabled successfully!
02:42 PM [INFO] [Regios] Regios Developed by [Adamki11s].
02:42 PM [INFO] [Vault][Economy] Essentials Economy hooked.
02:42 PM [INFO] [Vault][Economy] Essentials Economy found: Loaded
02:42 PM [INFO] [Vault][Permission] PermissionsEx found: Waiting
02:42 PM [INFO] [Vault] - Warning Using PEX can cause SuperPerms compatibility issues with non-Vault enabled plugins.
02:42 PM [INFO] [Vault][Permission] GroupManager hooked.
02:42 PM [INFO] [Vault][Permission] GroupManager found: Loaded
02:42 PM [INFO] [Vault][Permission] SuperPermissions loaded as backup permission system.
02:42 PM [INFO] [Vault][Chat] PermissionsEx found: Waiting
02:42 PM [INFO] [Vault][Permission] GroupManager - Chat hooked.
02:42 PM [INFO] [Vault][Chat] GroupManager found: Loaded
02:42 PM [INFO] [Vault] Enabled Version 1.1.4-b88
02:42 PM [INFO] [VoxelSniper] Config loaded
02:42 PM [INFO] VoxelSniper version 5.019 is enabled! Snipe away.
02:42 PM [INFO] WorldEdit 4.7 enabled.
02:42 PM [SEVERE] WorldEdit: Unable to read default configuration: config.yml
02:42 PM [INFO] WorldEdit: Using the Bukkit Permissions API.
02:42 PM [INFO] WorldGuard: Using the Bukkit Permissions API.
02:42 PM [SEVERE] WorldGuard: Unable to read default configuration: blacklist.txt
02:42 PM [WARNING] WorldGuard blacklist does not exist.
02:42 PM [INFO] WorldGuard: (World One) Single session is enforced.
02:42 PM [INFO] WorldGuard: (World One) TNT ignition is PERMITTED.
02:42 PM [INFO] WorldGuard: (World One) Lighters are PERMITTED.
02:42 PM [INFO] WorldGuard: (World One) Lava fire is blocked.
02:42 PM [INFO] WorldGuard: (World One) Fire spread is UNRESTRICTED.
02:42 PM [INFO] WorldGuard: Loaded configuration for world 'World One"
02:42 PM [SEVERE] WorldGuard: Unable to read default configuration: blacklist.txt
02:42 PM [WARNING] WorldGuard blacklist does not exist.
02:42 PM [INFO] WorldGuard: (World One_nether) Single session is enforced.
02:42 PM [INFO] WorldGuard: (World One_nether) TNT ignition is PERMITTED.
02:42 PM [INFO] WorldGuard: (World One_nether) Lighters are PERMITTED.
02:42 PM [INFO] WorldGuard: (World One_nether) Lava fire is blocked.
02:42 PM [INFO] WorldGuard: (World One_nether) Fire spread is UNRESTRICTED.
02:42 PM [INFO] WorldGuard: Loaded configuration for world 'World One_nether"
02:42 PM [SEVERE] WorldGuard: Unable to read default configuration: blacklist.txt
02:42 PM [WARNING] WorldGuard blacklist does not exist.
02:42 PM [INFO] WorldGuard: (World One_the_end) Single session is enforced.
02:42 PM [INFO] WorldGuard: (World One_the_end) TNT ignition is PERMITTED.
02:42 PM [INFO] WorldGuard: (World One_the_end) Lighters are PERMITTED.
02:42 PM [INFO] WorldGuard: (World One_the_end) Lava fire is blocked.
02:42 PM [INFO] WorldGuard: (World One_the_end) Fire spread is UNRESTRICTED.
02:42 PM [INFO] WorldGuard: Loaded configuration for world 'World One_the_end"
02:42 PM [WARNING] WorldGuard: Region file for world "World One" missing or inaccessible.
02:42 PM [WARNING] WorldGuard: Region file for world "World One_nether" missing or inaccessible.
02:42 PM [WARNING] WorldGuard: Region file for world "World One_the_end" missing or inaccessible.
02:42 PM [INFO] WorldGuard 5.3 enabled.
02:42 PM [INFO] [xAuth] 'Permissions' v3.1.6 support enabled!
02:42 PM [INFO] [xAuth] Connection to database established!
02:42 PM [INFO] [xAuth] Accounts: 8, Sessions: 0
02:42 PM [INFO] [xAuth] v2.0b4.3 Enabled!
02:42 PM [INFO] [ecoCreature] 0.0.7a (People are creatures too!) enabled.
02:42 PM [INFO] Fake Permissions version 3.1.6 is enabled!
02:42 PM [INFO] WorldEdit: Using the Bukkit Permissions API.
02:42 PM [INFO] WorldGuard: Using the Bukkit Permissions API.
02:42 PM [INFO] [dynmap] Using Permissions 3.1.6 for access control
02:42 PM [INFO] [dynmap] Loaded 12 shaders.
02:42 PM [INFO] [dynmap] Loaded 82 perspectives.
02:42 PM [INFO] [dynmap] Loaded 7 lightings.
02:42 PM [INFO] [dynmap] Loaded 3 maps of world 'World One'.
02:42 PM [INFO] [dynmap] Loaded 2 maps of world 'World One_nether'.
02:42 PM [INFO] [dynmap] Loaded 2 maps of world 'World One_the_end'.
02:42 PM [INFO] [dynmap] Dynmap WebServer started on null:8123
02:42 PM [INFO] [dynmap] version 0.25 is enabled
02:42 PM [SEVERE] Error occurred while enabling Citizens v1.1.2 (Is it up to date?): net/citizensnpcs/api/event/citizens/CitizensEvent
02:42 PM [INFO] [NarrowtuxLib] v1.0.1 by [narrowtux] enabled.
02:42 PM [INFO] Version: 101
02:42 PM [INFO] [Register] Payment method found (Essentials version: 2.2)
02:42 PM [INFO] Server permissions file permissions.yml is empty, ignoring it
02:42 PM [INFO] Done (0.535s)! For help, type "help" or "?"
02:42 PM [INFO] GroupManager - INFO - Bukkit Permissions Updated! 

 

Get rid of PEX, SuperPerms, and possibly Vault. They are causing permission conflicts.

 

Okay i'll do that, but i dont see a plugin that saids PEX or SuperPerms, and what is Vault possibly? :O

 

It does look like it might be the plugin Vault. From your log it appears to detect PermissionsEX despite PEX not appearing to be installed. I would assume it is a bug in Vault. I'd remove it and see if it fixes the problem, and if it does report the issue to the creator of Vault.

 

Oh thank you ^^ It works now... but now Ecocreature doesnt work =/...

Hmm nvm doesnt work, its not going off of GroupManager, anything else is should remove?...

Hmm removed register, still nothing... any advice?

Anyone?....

EDIT by Moderator: merged posts, please use the edit button instead of double posting.