/save-all causes errors

So /save-all causes major errors but doesn't crash the server, it causes a 10 - 20 second lag delay. This error happens after the server has ran for about 2 - 3 hours, usually after a restart /save-all instantly saves with no errors. I also disabled "auto-save" feature in Bukkit.yml because it was causing 10 - 20 lag delays, so now i manually /save-all before server restarts because it gives delay and errors.

I'm on Bukkit 1.7.2 Ro.3 - I have a 32GB, SSD Hard drive dedicated server

Been running a Minecraft server for 2 years at least.


Error log:

Code:

[17:32:17] [Thread-19/WARN]: [Server] The main thread failed to respond after 10 seconds
[17:32:20] [Thread-19/WARN]: [Server] Probable Plugin causes: 'NoLagg and BKCommonLib'
[17:32:20] [Thread-19/WARN]: [Server] What follows is the stack trace of the main thread
[17:32:20] [Thread-19/WARN]: [Server]    at java.lang.Thread.currentThread(Native Method)
[17:32:20] [Thread-19/WARN]: [Server]    at java.lang.ThreadLocal.set(Unknown Source)
[17:32:20] [Thread-19/WARN]: [Server]    at org.apache.logging.log4j.core.config.AppenderControl.callAppender(AppenderControl.java:112)
[17:32:20] [Thread-19/WARN]: [Server]    at org.apache.logging.log4j.core.config.LoggerConfig.callAppenders(LoggerConfig.java:425)
[17:32:20] [Thread-19/WARN]: [Server]    at org.apache.logging.log4j.core.config.LoggerConfig.log(LoggerConfig.java:406)
[17:32:20] [Thread-19/WARN]: [Server]    at org.apache.logging.log4j.core.config.LoggerConfig.log(LoggerConfig.java:367)
[17:32:20] [Thread-19/WARN]: [Server]    at org.apache.logging.log4j.core.Logger.log(Logger.java:110)
[17:32:20] [Thread-19/WARN]: [Server]    at org.apache.logging.log4j.spi.AbstractLogger.error(AbstractLogger.java:609)
[17:32:20] [Thread-19/WARN]: [Server]    at org.bukkit.craftbukkit.v1_7_R1.util.ForwardLogHandler.publish(ForwardLogHandler.java:33)
[17:32:20] [Thread-19/WARN]: [Server]    at java.util.logging.Logger.log(Unknown Source)
[17:32:20] [Thread-19/WARN]: [Server]    at java.util.logging.Logger.doLog(Unknown Source)
[17:32:20] [Thread-19/WARN]: [Server]    at java.util.logging.Logger.log(Unknown Source)
[17:32:20] [Thread-19/WARN]: [Server]    at com.bergerkiller.bukkit.nolagg.NoLaggComponent.log(NoLaggComponent.java:18)
[17:32:20] [Thread-19/WARN]: [Server]    at com.bergerkiller.bukkit.nolagg.NoLaggComponent.disable(NoLaggComponent.java:74)
[17:32:20] [Thread-19/WARN]: [Server]    at com.bergerkiller.bukkit.nolagg.NoLagg.disable(NoLagg.java:123)
[17:32:20] [Thread-19/WARN]: [Server]    at com.bergerkiller.bukkit.common.PluginBase.onDisable(PluginBase.java:801)
[17:32:20] [Thread-19/WARN]: [Server]    at org.bukkit.plugin.java.JavaPlugin.setEnabled(JavaPlugin.java:252)
[17:32:20] [Thread-19/WARN]: [Server]    at org.bukkit.plugin.java.JavaPluginLoader.disablePlugin(JavaPluginLoader.java:374)
[17:32:20] [Thread-19/WARN]: [Server]    at org.bukkit.plugin.SimplePluginManager.disablePlugin(SimplePluginManager.java:408)
[17:32:20] [Thread-19/WARN]: [Server]    at org.bukkit.plugin.SimplePluginManager.disablePlugins(SimplePluginManager.java:401)
[17:32:20] [Thread-19/WARN]: [Server]    at org.bukkit.craftbukkit.v1_7_R1.CraftServer.disablePlugins(CraftServer.java:390)
[17:32:20] [Thread-19/WARN]: [Server]    at net.minecraft.server.v1_7_R1.MinecraftServer.stop(MinecraftServer.java:375)
[17:32:20] [Thread-19/WARN]: [Server]    at net.minecraft.server.v1_7_R1.MinecraftServer.run(MinecraftServer.java:488)
[17:32:20] [Thread-19/WARN]: [Server]    at net.minecraft.server.v1_7_R1.ThreadServerApplication.run(SourceFile:617)

Please don't ask me stupid questions or give stupid statements, i'm only looking for accurate answers and help, if you don't know what this error is or how it could be fixed then don't reply!

Thank you!

 

ThaSourceGaming
Hey!
I noticed this:

Code:

Probable Plugin causes: 'NoLagg and BKCommonLib'

Can we see a startup log, if possible? Also, do you use any automatic save plugins? If so, do you get any errors when that saves?

 

I even took out No-Lagg + BKCommonLib, but this issue stays.

 

ThaSourceGaming
Can we just see a server.log for now?

 

No other automatic plugin saves. I know mcMMO has a backup system, but i highly doubt it would be that. Then again I have to wait an hour or two of the server running in order to see if /save-all gives delays and error.

Code:

[17:40:37] [Server thread/INFO]: Starting minecraft server version 1.7.2
[17:40:37] [Server thread/INFO]: Loading properties
[17:40:37] [Server thread/INFO]: Default game type: SURVIVAL
[17:40:37] [Server thread/INFO]: Generating keypair
[17:40:37] [Server thread/INFO]: Starting Minecraft server on *:25565
[17:40:38] [Server thread/INFO]: This server is running CraftBukkit version git-Bukkit-1.7.2-R0.3-b3020jnks (MC: 1.7.2) (Implementing API version 1.7.2-R0.3)
[17:40:38] [Thread-8/INFO]: ----- Bukkit Auto Updater -----
[17:40:38] [Thread-8/INFO]: It appears that you're running a Beta Build, when you've specified in bukkit.yml that you prefer to run Recommended Builds.
[17:40:38] [Thread-8/INFO]: If you would like to be kept informed about new Beta Build releases, it is recommended that you change 'preferred-channel' in your bukkit.yml to 'beta'.
[17:40:38] [Thread-8/INFO]: With that set, you will be told whenever a new version is available for download, so that you can always keep up to date and secure with the latest fixes.
[17:40:38] [Thread-8/INFO]: If you would like to disable this warning, simply set 'suggest-channels' to false in bukkit.yml.
[17:40:38] [Thread-8/INFO]: ----- ------------------- -----
[17:40:39] [Server thread/INFO]: [WorldBorder] Loading WorldBorder v1.7.7
[17:40:39] [Server thread/INFO]: [GroupManager] Loading GroupManager v2.0 (2.11.1) (Phoenix)
[17:40:39] [Server thread/INFO]: [WorldEdit] Loading WorldEdit v5.6
[17:40:39] [Server thread/INFO]: [FrameProtect] Loading FrameProtect v2.5
[17:40:39] [Server thread/INFO]: [mcore] Loading mcore v7.0.2
[17:40:39] [Server thread/INFO]: [Vault] Loading Vault v1.2.31-b411
[17:40:39] [Server thread/INFO]: [PlotMe] Loading PlotMe v0.13b
[17:40:39] [Server thread/INFO]: [Multiverse-Core] Loading Multiverse-Core v2.5-b677
[17:40:39] [Server thread/INFO]: [HealthBar] Loading HealthBar v1.8.2
[17:40:39] [Server thread/INFO]: [CombatTag] Loading CombatTag v6.0.2
[17:40:39] [Server thread/INFO]: [WorldGuard] Loading WorldGuard v5.9
[17:40:39] [Server thread/INFO]: [SilkSpawners] Loading SilkSpawners v3.3.4
[17:40:39] [Server thread/INFO]: [ObsidianDestroyer] Loading ObsidianDestroyer v4.2.1
[17:40:39] [Server thread/INFO]: [AutoMessage] Loading AutoMessage v2.4.0
[17:40:39] [Server thread/INFO]: [Spectate] Loading Spectate v2.0
[17:40:39] [Server thread/INFO]: [ChatClear] Loading ChatClear v1.0
[17:40:39] [Server thread/INFO]: [ClaimLevels] Loading ClaimLevels v1.4
[17:40:39] [Server thread/INFO]: [IP-Check] Loading IP-Check v1.5.4
[17:40:39] [Server thread/INFO]: [ChestRegen] Loading ChestRegen v2.3.3
[17:40:39] [Server thread/INFO]: [Permissions] Loading Permissions v3.1.6
[17:40:39] [Server thread/INFO]: [WhatIsIt] Loading WhatIsIt v1.3.8
[17:40:39] [Server thread/INFO]: [ChestShop] Loading ChestShop v3.7.3
[17:40:39] [Server thread/INFO]: [ProtocolLib] Loading ProtocolLib v3.1.3-SNAPSHOT
[17:40:39] [Server thread/INFO]: [Votifier] Loading Votifier v1.9
[17:40:39] [Server thread/INFO]: [HoloAPI] Loading HoloAPI v1.0.6
[17:40:39] [Server thread/INFO]: [mcMMO] Loading mcMMO v1.4.07-b3337
[17:40:39] [Server thread/INFO]: [PwnFilter] Loading PwnFilter v3.3.0
[17:40:39] [Server thread/INFO]: [Essentials] Loading Essentials vPre2.13.1.6
[17:40:39] [Server thread/INFO]: [floAuction] Loading floAuction v3.0.0
[17:40:39] [Server thread/INFO]: [EssentialsProtect] Loading EssentialsProtect vPre2.13.1.6
[17:40:39] [Server thread/INFO]: [Enjin_Minecraft_Plugin] Loading Enjin_Minecraft_Plugin v2.5.3-bukkit
[17:40:39] [Server thread/INFO]: [EssentialsSpawn] Loading EssentialsSpawn vPre2.13.1.6
[17:40:39] [Server thread/INFO]: [Multiverse-Portals] Loading Multiverse-Portals v2.5-b699
[17:40:39] [Server thread/INFO]: [Multiverse-Inventories] Loading Multiverse-Inventories v2.5-b357
[17:40:39] [Server thread/INFO]: [EssentialsGeoIP] Loading EssentialsGeoIP vPre2.13.1.6
[17:40:39] [Server thread/INFO]: [EssentialsAntiBuild] Loading EssentialsAntiBuild vPre2.13.1.6
[17:40:39] [Server thread/INFO]: [DisguiseCraft] Loading DisguiseCraft v5.1
[17:40:39] [Server thread/INFO]: [CompatNoCheatPlus] Loading CompatNoCheatPlus v6.4.4-RC-sMD5NET-b61
[17:40:39] [Server thread/INFO]: [BKCommonLib] Loading BKCommonLib v1.57
[17:40:40] [Server thread/INFO]: [EssentialsChat] Loading EssentialsChat vPre2.13.1.6
[17:40:40] [Server thread/INFO]: [Factions] Loading Factions v2.3.0
[17:40:40] [Server thread/INFO]: [MobDisguisePVPControl] Loading MobDisguisePVPControl v0.6
[17:40:40] [Server thread/INFO]: [NoCheatPlus] Loading NoCheatPlus v3.10.8-RC-sMD5NET-b664
[17:40:40] [Server thread/INFO]: [PlayerHeads] Loading PlayerHeads v3.7-jenkins-PlayerHeads-1-45-g83e5f2e
[17:40:40] [Server thread/INFO]: [NoLagg] Loading NoLagg v1.90.4
[17:40:40] [Server thread/INFO]: [FactionChat] Loading FactionChat v1.743
[17:40:40] [Server thread/INFO]: [mcore] Enabling mcore v7.0.2
[17:40:40] [Server thread/INFO]: [mcore 7.0.2] === ENABLE START ===
[17:40:40] [Server thread/INFO]: [mcore 7.0.2] §eSetup of SenderIdMixinDefault took §d103§ems.
[17:40:40] [Server thread/INFO]: [mcore 7.0.2] === ENABLE §aCOMPLETE §e(Took §d209ms§e) ===
[17:40:40] [Server thread/INFO]: [Vault] Enabling Vault v1.2.31-b411
[17:40:40] [Server thread/INFO]: [Vault] [Vault][Economy] Essentials Economy found: Waiting
[17:40:40] [Server thread/INFO]: [Vault] [Vault][Permission] GroupManager found: Waiting
[17:40:40] [Server thread/INFO]: [Vault] [Vault][Permission] SuperPermissions loaded as backup permission system.
[17:40:40] [Server thread/INFO]: [Vault] [Vault][Chat] GroupManager found: Waiting
[17:40:40] [Server thread/INFO]: [Vault] [Vault] Enabled Version 1.2.31-b411
[17:40:40] [Server thread/INFO]: [mcore 7.0.2] §aActivated §eintegration with §dVault
[17:40:40] [Server thread/INFO]: [PlotMe] Enabling PlotMe v0.13b
[17:40:40] [Server thread/INFO]: §9[PlotMe] §r 174 plots loaded
[17:40:40] [Server thread/INFO]: [ProtocolLib] Enabling ProtocolLib v3.1.3-SNAPSHOT
[17:40:40] [Server thread/INFO]: [ProtocolLib] Started structure compiler thread.
[17:40:40] [Server thread/INFO]: [mcore 7.0.2] §aActivated §eintegration with §dProtocolLib
[17:40:40] [Server thread/INFO]: [mcMMO] Enabling mcMMO v1.4.07-b3337
[17:40:40] [Server thread/INFO]: [mcMMO] HealthBar plugin found, mcMMO's healthbars are automatically disabled.
[17:40:41] [Server thread/INFO]: [BKCommonLib] Enabling BKCommonLib v1.57
[17:40:41] [Server thread/INFO]: [BKCommonLib] BKCommonLib is running on CraftBukkit (git-Bukkit-1.7.2-R0.3-b3020jnks) : v1_7_R1 (Minecraft 1.7.2)
[17:40:41] [Server thread/INFO]: [BKCommonLib] [Network] Now using the ProtocolLib library to provide Packet Listener and Monitor support
[17:40:41] [Server thread/INFO]: [BKCommonLib] Have a problem Bukkit can't fix? Write a library!
[17:40:41] [Server thread/INFO]: BKCommonLib version 1.57 enabled! (0.047s)
[17:40:41] [Server thread/INFO]: Preparing level "world_main"
[17:40:41] [Server thread/INFO]: Preparing start region for level 0 (Seed: 8770474090029577718)
[17:40:43] [Server thread/INFO]: Preparing spawn area: 0%
[17:40:43] [Server thread/INFO]: Preparing start region for level 1 (Seed: 8770474090029577718)
[17:40:44] [Server thread/INFO]: Preparing start region for level 2 (Seed: 8770474090029577718)
[17:40:44] [Server thread/INFO]: [WorldBorder] Enabling WorldBorder v1.7.7
[17:40:44] [Server thread/INFO]: [WorldBorder] [CONFIG] Using elliptic/round border, knockback of 3.0 blocks, and timer delay of 5.
[17:40:44] [Server thread/INFO]: [WorldBorder] [CONFIG] Border-checking timed task started.
[17:40:44] [Server thread/INFO]: [WorldBorder] [CONFIG] World "world_main" has border radius 30000 at X: -1021.6 Z: -59.4
[17:40:44] [Server thread/INFO]: [WorldBorder] [CONFIG] World "world_main_nether" has border radius 30000 at X: 4.5 Z: 3.5
[17:40:44] [Server thread/INFO]: For reference, the main world's spawn location is at X: -1022.0 Y: 65.0 Z: -60.0
[17:40:44] [Server thread/INFO]: [GroupManager] Enabling GroupManager v2.0 (2.11.1) (Phoenix)
[17:40:44] [Server thread/WARN]: GroupManager - SEVERE - Missing or corrupt 'allow_commandblocks' node. Using default settings
[17:40:44] [Server thread/INFO]: GroupManager - INFO - World Found: flatroom
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:groupmanager_default' not found for group Default. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:bukkit_default' not found for group Default. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:towny_default' not found for group Default. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:essentials_builder' not found for group Builder. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:towny_builder' not found for group Builder. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:groupmanager_moderator' not found for group Moderator. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:bukkit_moderator' not found for group Moderator. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:towny_moderator' not found for group Moderator. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:vanish_moderator' not found for group Moderator. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:groupmanager_admin' not found for group Admin. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:bukkit_admin' not found for group Admin. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:towny_admin' not found for group Admin. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/WARN]: GroupManager - WARNING - Inherited group 'g:vanish_admin' not found for group Admin. Ignoring entry in file: plugins\GroupManager\worlds\flatroom\groups.yml
[17:40:44] [Server thread/INFO]: GroupManager - INFO - World Found: plotworld
[17:40:44] [Server thread/INFO]: GroupManager - INFO - World Found: world_main
[17:40:44] [Server thread/INFO]: GroupManager - INFO - World Found: world_main_nether
[17:40:44] [Server thread/INFO]: GroupManager - INFO - World Found: world_main_the_end
[17:40:44] [Server thread/INFO]: GroupManager - INFO - Superperms support enabled.
[17:40:44] [Server thread/INFO]: GroupManager - INFO - Scheduled Data Saving is set for every 10 minutes!
[17:40:44] [Server thread/INFO]: GroupManager - INFO - Backups will be retained for 24 hours!
[17:40:44] [Server thread/INFO]: GroupManager version 2.0 (2.11.1) (Phoenix) is enabled!
[17:40:44] [Server thread/INFO]: [Vault][Permission] GroupManager hooked.
[17:40:44] [Server thread/INFO]: [Vault][Chat] GroupManager - Chat hooked.
[17:40:44] [Server thread/INFO]: [WorldEdit] Enabling WorldEdit v5.6
[17:40:44] [Server thread/INFO]: WEPIF: Using the Bukkit Permissions API.
[17:40:44] [Server thread/INFO]: [FrameProtect] Enabling FrameProtect v2.5
[17:40:44] [Server thread/INFO]: [FrameProtect] enabled.
[17:40:44] [Server thread/INFO]: [Multiverse-Core] Enabling Multiverse-Core v2.5-b677
[17:40:44] [Server thread/INFO]: [Multiverse-Core] [AllPay] - Version 13.0 - hooked into Essentials Economy for Multiverse-Core v2.5-b677
[17:40:45] [Server thread/INFO]: Preparing start region for level 3 (Seed: 648186102966268853)
[17:40:45] [Server thread/INFO]: Preparing start region for level 4 (Seed: 7056768998285058815)
[17:40:45] [Server thread/INFO]: [Multiverse-Core] 5 - World(s) loaded.
[17:40:45] [Server thread/INFO]: [Multiverse-Core] Version 2.5-b677 (API v18) Enabled - By Rigby, fernferret, lithium3141 and main--
[17:40:45] [Server thread/INFO]: [HealthBar] Enabling HealthBar v1.8.2
[17:40:45] [Server thread/INFO]: [CombatTag] Enabling CombatTag v6.0.2
[17:40:45] [Server thread/INFO]: [CombatTag] has loaded with a tag time of 10 seconds
[17:40:45] [Server thread/INFO]: [WorldGuard] Enabling WorldGuard v5.9
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main) TNT ignition is PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main) Lighters are PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main) Lava fire is blocked.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main) All fire spread is disabled.
[17:40:45] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'world_main'
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_nether) TNT ignition is PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_nether) Lighters are PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_nether) Lava fire is blocked.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_nether) All fire spread is disabled.
[17:40:45] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'world_main_nether'
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_the_end) TNT ignition is PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_the_end) Lighters are PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_the_end) Lava fire is blocked.
[17:40:45] [Server thread/INFO]: [WorldGuard] (world_main_the_end) All fire spread is disabled.
[17:40:45] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'world_main_the_end'
[17:40:45] [Server thread/INFO]: [WorldGuard] (flatroom) TNT ignition is PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (flatroom) Lighters are PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (flatroom) Lava fire is blocked.
[17:40:45] [Server thread/INFO]: [WorldGuard] (flatroom) All fire spread is disabled.
[17:40:45] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'flatroom'
[17:40:45] [Server thread/INFO]: [WorldGuard] Blacklist loaded.
[17:40:45] [Server thread/INFO]: [WorldGuard] (plotworld) TNT ignition is PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (plotworld) Lighters are PERMITTED.
[17:40:45] [Server thread/INFO]: [WorldGuard] (plotworld) Lava fire is blocked.
[17:40:45] [Server thread/INFO]: [WorldGuard] (plotworld) All fire spread is disabled.
[17:40:45] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'plotworld'
[17:40:45] [Server thread/INFO]: [WorldGuard] 16 regions loaded for 'world_main'
[17:40:45] [Server thread/INFO]: [WorldGuard] 1 regions loaded for 'world_main_nether'
[17:40:45] [Server thread/INFO]: [WorldGuard] 0 regions loaded for 'world_main_the_end'
[17:40:45] [Server thread/INFO]: [WorldGuard] 10 regions loaded for 'flatroom'
[17:40:45] [Server thread/INFO]: [WorldGuard] 1 regions loaded for 'plotworld'
[17:40:46] [Server thread/INFO]: [SilkSpawners] Enabling SilkSpawners v3.3.4
[17:40:46] [Server thread/INFO]: [SilkSpawners] ErrorLogger is disabled, regardless of your settings to give the author enough time to update it!
[17:40:46] [Server thread/INFO]: [SilkSpawners] This feature will be available again in the near future!
[17:40:46] [Server thread/INFO]: [SilkSpawners] AutoUpdater enabled
[17:40:46] [Server thread/INFO]: [ObsidianDestroyer] Enabling ObsidianDestroyer v4.2.1
[17:40:46] [Server thread/INFO]: [AutoMessage] Enabling AutoMessage v2.4.0
[17:40:46] [Server thread/INFO]: [Spectate] Enabling Spectate v2.0
[17:40:46] [Server thread/INFO]: [ChatClear] Enabling ChatClear v1.0
[17:40:46] [Server thread/INFO]: ChatClear activited.
[17:40:46] [Server thread/INFO]: by Humm3lPlays
[17:40:46] [Server thread/INFO]: [ClaimLevels] Enabling ClaimLevels v1.4
[17:40:46] [Server thread/INFO]: [IP-Check] Enabling IP-Check v1.5.4
[17:40:46] [Server thread/INFO]: [IP-Check] Would you like a Swiss Cake Roll?
[17:40:46] [Server thread/INFO]: [ChestRegen] Enabling ChestRegen v2.3.3
[17:40:46] [Server thread/INFO]: [ChestRegen] Hooked into Metrics!
[17:40:46] [Server thread/INFO]: ChestRegen Version 2.3.3 Has been Enabled
[17:40:46] [Server thread/INFO]: [Permissions] Enabling Permissions v3.1.6
[17:40:46] [Server thread/INFO]: Fake Permissions version 3.1.6 is enabled!
[17:40:46] [Server thread/INFO]: WEPIF: Using the Bukkit Permissions API.
[17:40:46] [Server thread/INFO]: [WhatIsIt] Enabling WhatIsIt v1.3.8
[17:40:46] [Server thread/INFO]: [WhatIsIt] has been enabled.
[17:40:46] [Server thread/INFO]: [ChestShop] Enabling ChestShop v3.7.3
[17:40:46] [Server thread/INFO]: [ChestShop] WorldGuard version 5.9 loaded.
[17:40:46] [Server thread/INFO]: [ChestShop] Vault loaded! Found an economy plugin!
[17:40:46] [Server thread/INFO]: [Votifier] Enabling Votifier v1.9
[17:40:46] [Server thread/INFO]: [Votifier] Loaded vote listener: FlatfileVoteListener
[17:40:46] [Server thread/INFO]: [Votifier] Votifier enabled.
[17:40:46] [Server thread/INFO]: [HoloAPI] Enabling HoloAPI v1.0.6
[17:40:46] [Server thread/INFO]: [PwnFilter] Enabling PwnFilter v3.3.0
[17:40:46] [Server thread/INFO]: [PwnFilter] Now logging to plugins\PwnFilter\pwnfilter.log
[17:40:46] [Server thread/INFO]: [PwnFilter] Vault found. Enabling actions requiring Vault
[17:40:46] [Server thread/INFO]: [PwnFilter] Activated CommandListener with Priority Setting: LOWEST Rule Count: 7
[17:40:46] [Server thread/INFO]: [PwnFilter] Activated PlayerListener with Priority Setting: LOWEST Rule Count: 7
[17:40:46] [Server thread/INFO]: [PwnFilter] Activated SignListener with Priority Setting: LOWEST Rule Count: 7
[17:40:46] [Server thread/INFO]: [PwnFilter] Activated ItemListener with Priority Setting: LOWEST Rule Count: 0
[17:40:46] [Server thread/INFO]: [Essentials] Enabling Essentials vPre2.13.1.6
[17:40:47] [Server thread/INFO]: File C:\Users\root\Desktop\ThaCraftTest\plugins\Essentials\config.yml is not utf-8 encoded, trying windows-1252
[17:40:47] [Server thread/INFO]: File C:\Users\root\Desktop\ThaCraftTest\plugins\Essentials\config.yml is not utf-8 encoded, trying windows-1252
[17:40:47] [Server thread/INFO]: [Vault][Economy] Essentials Economy hooked.
[17:40:47] [Server thread/INFO]: Essentials: Using GroupManager based permissions.
[17:40:47] [Server thread/INFO]: [floAuction] Enabling floAuction v3.0.0
[17:40:47] [Server thread/INFO]: [Auction] has been enabled.
[17:40:47] [Server thread/INFO]: [EssentialsProtect] Enabling EssentialsProtect vPre2.13.1.6
[17:40:47] [Server thread/INFO]: [Enjin_Minecraft_Plugin] Enabling Enjin_Minecraft_Plugin v2.5.3-bukkit
[17:40:47] [Server thread/INFO]: [Enjin Minecraft Plugin] Votifier plugin found, enabling Votifier support.
[17:40:47] [Server thread/INFO]: [Enjin Minecraft Plugin] MC 1.3 or above found, enabling version 2 XP handling.
[17:40:47] [Server thread/INFO]: [EssentialsSpawn] Enabling EssentialsSpawn vPre2.13.1.6
[17:40:47] [Server thread/INFO]: [Multiverse-Portals] Enabling Multiverse-Portals v2.5-b699
[17:40:47] [Server thread/INFO]: [Multiverse-Portals] - Version 2.5-b699 Enabled - By Rigby and fernferret
[17:40:47] [Server thread/INFO]: [MVPLogging] 6 - Portals(s) loaded
[17:40:47] [Server thread/INFO]: [Multiverse-Inventories] Enabling Multiverse-Inventories v2.5-b357
[17:40:47] [Server thread/INFO]: [Multiverse-Inventories 2.5-b357] enabled.
[17:40:47] [Server thread/INFO]: [EssentialsGeoIP] Enabling EssentialsGeoIP vPre2.13.1.6
[17:40:47] [Server thread/INFO]: [EssentialsGeoIP] This product includes GeoLite data created by MaxMind, available from http://www.maxmind.com/.
[17:40:47] [Server thread/INFO]: [EssentialsAntiBuild] Enabling EssentialsAntiBuild vPre2.13.1.6
[17:40:47] [Server thread/INFO]: [DisguiseCraft] Enabling DisguiseCraft v5.1
[17:40:47] [Server thread/INFO]: [DisguiseCraft] Version 5.1 is enabled!
[17:40:47] [Server thread/INFO]: [CompatNoCheatPlus] Enabling CompatNoCheatPlus v6.4.4-RC-sMD5NET-b61
[17:40:47] [Server thread/INFO]: [cncp] Ensured that the following plugin is enabled: WorldGuard
[17:40:47] [Server thread/INFO]: [cncp] Registered hook(NCPHook might get added later): mcMMO(default) / 2.1
[17:40:47] [Server thread/INFO]: [cncp] Registered hook(NCPHook might get added later): BlockBreak(default) / 1.1
[17:40:47] [Server thread/INFO]: [cncp] Registered hook(NCPHook might get added later): BlockPlace(default) / 1.0
[17:40:47] [Server thread/INFO]: [cncp] Registered hook(NCPHook might get added later): InstaBreak(default) / 1.0
[17:40:47] [Server thread/INFO]: [CompatNoCheatPlus] CompatNoCheatPlus v6.4.4-RC-sMD5NET-b61 is enabled. Some hooks might get registered with NoCheatPlus later on.
[17:40:47] [Server thread/INFO]: [EssentialsChat] Enabling EssentialsChat vPre2.13.1.6
[17:40:47] [Server thread/INFO]: [Factions] Enabling Factions v2.3.0
[17:40:47] [Server thread/INFO]: [Factions 2.3.0] === ENABLE START ===
[17:40:48] [Server thread/INFO]: [Factions 2.3.0] === ENABLE COMPLETE (Took 504ms) ===
[17:40:48] [Server thread/INFO]: [MobDisguisePVPControl] Enabling MobDisguisePVPControl v0.6
[17:40:48] [Server thread/INFO]: MobDisguisePVPControl version 0.6 is enabled!
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Enabling NoCheatPlus v3.10.8-RC-sMD5NET-b664
[17:40:48] [Server thread/INFO]: [NoCheatPlus] McAccess set to: 1.7.2 / CB2922-DEV
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Added block-info for Minecraft 1.5 blocks.
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Added block-info for Minecraft 1.6.1 blocks.
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Added block-info for Minecraft 1.7.2 blocks.
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Inventory checks: FastConsume is available, disabled InstantEat.
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Version 3.10.8-RC-sMD5NET-b664 is enabled.
[17:40:48] [Server thread/INFO]: [NoCheatPlus] Added hook: mcMMO(cncp) [2.3].
[17:40:48] [Server thread/INFO]: [CompatNoCheatPlus] [cncp] Added 1 registered hooks to NoCheatPlus.
[17:40:49] [Server thread/INFO]: [PlayerHeads] Enabling PlayerHeads v3.7-jenkins-PlayerHeads-1-45-g83e5f2e
[17:40:49] [Server thread/INFO]: [NoLagg] Enabling NoLagg v1.90.4
[17:40:49] [Server thread/INFO]: NoLagg version 1.90.4 enabled! (0.345s)
[17:40:49] [Server thread/INFO]: [FactionChat] Enabling FactionChat v1.743
[17:40:49] [Server thread/INFO]: FactionChat: Version: 1.743 Enabled.
[17:40:49] [Server thread/INFO]: Server permissions file permissions.yml is empty, ignoring it
[17:40:49] [Server thread/INFO]: Done (8.647s)! For help, type "help" or "?"
[17:40:49] [Server thread/INFO]: Starting GS4 status listener
[17:40:49] [Query Listener #1/INFO]: Query running on 0.0.0.0:25566
[17:40:50] [Server thread/INFO]: [NoCheatPlus] Post-enable running...
[17:40:50] [Server thread/INFO]: [NoCheatPlus] Post-enable finished.
[17:40:50] [pool-3-thread-12/INFO]: [HoloAPI] Custom images loaded.
[17:40:50] [pool-3-thread-12/INFO]: [HoloAPI] Animations loaded.
[17:40:51] [Server thread/INFO]: GroupManager - INFO - Bukkit Permissions Updated!
[17:40:54] [Server thread/INFO]: [HoloAPI] Holograms loaded

 

Can you post all of your plugins?

EDIT:

You still have BKCommonLib

Code:

[17:40:41] [Server thread/INFO]: [BKCommonLib] Enabling BKCommonLib v1.57
[17:40:41] [Server thread/INFO]: [BKCommonLib] BKCommonLib is running on CraftBukkit (git-Bukkit-1.7.2-R0.3-b3020jnks) : v1_7_R1 (Minecraft 1.7.2)
[17:40:41] [Server thread/INFO]: [BKCommonLib] [Network] Now using the ProtocolLib library to provide Packet Listener and Monitor support
[17:40:41] [Server thread/INFO]: [BKCommonLib] Have a problem Bukkit can't fix? Write a library!
[17:40:41] [Server thread/INFO]: BKCommonLib version 1.57 enabled! (0.047s)

 

ThaSourceGaming
I wonder...
What if you got AutoSaveWorld or a plugin of that type and saved with it? Would it do the same thing?
How about we try that? Haha.

 

Plugins:

And I know i still have BKCommonLib, After a week of taking out NoLagg and BKCommonLib it was still the same thing. So I put them back in.

 

Did you figure out what was causing the issue? I'm having a very similar problem with intermittent world-saves taking over 30sec (up from < 1sec). Only happens after a few hours of uptime, and usually disconnects everyone when it does. This is with SaveIt running with auto-save disabled.
Not meaning to hijack your thread, but you have alot of the same symptoms as me.