My server is running on Ubuntu Server Edition x86 v11.04, java is OpenJDK (IcedTea6 1.10.2) (build 20.0-b11) Bukkit build 1.7.3 It does not use any kind of wrapper. It also hosts a Mumble [Murmur], SSH and Terraria server (running under mono). All of these are running just fine. I start my server with "java -Xms512M -Xmx2500M -XX:UseGCOverheadLimit -jar bukkit.jar" I use BaseBukkitPlugin, Citizens, Daily Bonus, Death Feed, dynmap, Heavenly Mob, Home Sweet Home, iAuction, iConomy,Interesting Places, Lava Forge, Lockette, Lottery, MobBounty, MultiVerse, Permissions, Rapid Builder, Simple Vend, Slots, Sponge Restore, and Weather Sync. Server Log: Code: 2011-08-10 06:52:19 [INFO] Starting minecraft server version Beta 1.7.3 2011-08-10 06:52:19 [INFO] Loading properties 2011-08-10 06:52:19 [INFO] Starting Minecraft server on *:25565 2011-08-10 06:52:19 [INFO] This server is running Craftbukkit version git-Bukkit-0.0.0-945-g73697a4-b1000jnks (MC: 1.7.3) 2011-08-10 06:52:20 [INFO] [BaseBukkitPlugin 1.5] initialized 2011-08-10 06:52:20 [INFO] Lottery version 0.5.0 is enabled 2011-08-10 06:52:20 [INFO] [Permissions] (Yeti) was initialized. 2011-08-10 06:52:20 [INFO] [Permissions] version [3.1.6] (Yeti) loaded 2011-08-10 06:52:20 [INFO] Preparing level "world" 2011-08-10 06:52:20 [SEVERE] java.io.EOFException 2011-08-10 06:52:20 [SEVERE] at java.io.DataInputStream.readByte(DataInputStream.java:267) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.NBTBase.b(SourceFile:55) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.CompressedStreamTools.a(SourceFile:46) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.WorldMapCollection.b(SourceFile:110) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.WorldMapCollection.<init>(SourceFile:29) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.World.<init>(World.java:119) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.WorldServer.<init>(WorldServer.java:27) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:180) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:20 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) 2011-08-10 06:52:20 [INFO] Preparing start region for level 0 (Seed: 5137055502712328192) 2011-08-10 06:52:21 [INFO] Preparing start region for level 1 (Seed: 8172089319156480000) 2011-08-10 06:52:21 [INFO] Preparing spawn area: 28% 2011-08-10 06:52:21 [INFO] Chunk file at 3,-2 is in the wrong location; relocating. (Expected 3, -2, got 1, -10) 2011-08-10 06:52:21 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:21 [SEVERE] java.lang.Throwable 2011-08-10 06:52:21 [SEVERE] at org.bukkit.craftbukkit.util.LongHashtable.put(LongHashtable.java:19) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:75) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) 2011-08-10 06:52:21 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:21 [SEVERE] java.lang.Throwable 2011-08-10 06:52:21 [SEVERE] at org.bukkit.craftbukkit.util.LongHashtable.get(LongHashtable.java:32) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ChunkProviderServer.getOrCreateChunk(ChunkProviderServer.java:116) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:102) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) 2011-08-10 06:52:21 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:21 [INFO] net.minecraft.server.Chunk 2011-08-10 06:52:21 [SEVERE] java.lang.Throwable 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ChunkProviderServer.getOrCreateChunk(ChunkProviderServer.java:124) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:102) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:21 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) 2011-08-10 06:52:22 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:22 [SEVERE] java.lang.Throwable 2011-08-10 06:52:22 [SEVERE] at org.bukkit.craftbukkit.util.LongHashtable.get(LongHashtable.java:32) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getOrCreateChunk(ChunkProviderServer.java:116) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:98) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) 2011-08-10 06:52:22 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:22 [INFO] net.minecraft.server.Chunk 2011-08-10 06:52:22 [SEVERE] java.lang.Throwable 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getOrCreateChunk(ChunkProviderServer.java:124) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:98) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) 2011-08-10 06:52:22 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:22 [SEVERE] java.lang.Throwable 2011-08-10 06:52:22 [SEVERE] at org.bukkit.craftbukkit.util.LongHashtable.get(LongHashtable.java:32) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getOrCreateChunk(ChunkProviderServer.java:116) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:106) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) It then continued to repeat this over and over. I have cut out the repeats for conciseness. Code: 2011-08-10 06:52:22 [INFO] Chunk (1, -10) stored at (3, -2) 2011-08-10 06:52:22 [INFO] net.minecraft.server.Chunk 2011-08-10 06:52:22 [SEVERE] java.lang.Throwable 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getOrCreateChunk(ChunkProviderServer.java:124) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ChunkProviderServer.getChunkAt(ChunkProviderServer.java:106) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.a(MinecraftServer.java:255) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.init(MinecraftServer.java:148) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.MinecraftServer.run(MinecraftServer.java:335) 2011-08-10 06:52:22 [SEVERE] at net.minecraft.server.ThreadServerApplication.run(SourceFile:422) Then my stop command took effect. Code: 2011-08-10 07:01:09 [INFO] Stopping server 2011-08-10 07:01:09 [INFO] Lottery version 0.5.0 has been unloaded. 2011-08-10 07:01:09 [INFO] Lottery: has been disabled (including timers). 2011-08-10 07:01:09 [INFO] RapidBuilder Disabled 2011-08-10 07:01:09 [INFO] Lockette: Closing all automatic doors. 2011-08-10 07:01:09 [INFO] [MobBounty] v4.05 (Oxygen) disabled. 2011-08-10 07:01:09 [INFO] DailyBonus Disabled 2011-08-10 07:01:09 [INFO] DeathFeed: Plugin disabled. 2011-08-10 07:01:09 [INFO] Interesting Places v1.6 is disabled! 2011-08-10 07:01:09 [INFO] [Slots] All slot data saved. 2011-08-10 07:01:09 [INFO] [Slots] Slots disabled. 2011-08-10 07:01:09 [INFO] [SimpleVend] Version 1.3 has been disabled! 2011-08-10 07:01:09 [INFO] [MultiVerse] - Disabled 2011-08-10 07:01:09 [INFO] [Permissions] (Yeti) saving data... 2011-08-10 07:01:09 [INFO] [Permissions] (Yeti) saved all data. 2011-08-10 07:01:09 [INFO] [Permissions] (Yeti) disabled successfully. 2011-08-10 07:01:09 [INFO] [MobBounty] Permission plugin was disabled. 2011-08-10 07:01:09 [INFO] HomeSweetHome: Un-hooked from Permissions. 2011-08-10 07:01:09 [INFO] SpongeRestore disabled! 2011-08-10 07:01:09 [INFO] [iAuction] version 3.5 is disabled. 2011-08-10 07:01:09 [INFO] [dynmap] Unloaded 0 components. 2011-08-10 07:01:09 [INFO] [dynmap] Stopping map renderer... 2011-08-10 07:01:09 [INFO] [dynmap] Shutting down webserver... 2011-08-10 07:01:09 [INFO] [dynmap] Webserver shut down. 2011-08-10 07:01:09 [INFO] [Citizens] version [1.0.9d] (Odyssey) disabled 2011-08-10 07:01:09 [INFO] HomeSweetHome: Disabled. 2011-08-10 07:01:09 [INFO] [iConomy] Plugin disabled. 2011-08-10 07:01:09 [INFO] [MyPlugin] un-hooked from iConomy. 2011-08-10 07:01:09 [INFO] [MobBounty] Payment plugin was disabled. 2011-08-10 07:01:09 [INFO] [SimpleVend] iConomy released! 2011-08-10 07:01:09 [INFO] [Citizens] Payment method disabled. 2011-08-10 07:01:09 [INFO] HomeSweetHome: Un-hooked from iConomy. 2011-08-10 07:01:09 [INFO] [BaseBukkitPlugin 1.5] un-loaded 2011-08-10 07:01:09 [INFO] Saving chunks I have tried fixing all the world's regions with MCEdit, which says there isn't any. I have tried using Chunkster to fix them, but it didn't find any errors. I've tested the world in single player and it works just fine. I have had a similar problem in the past which MCEdit fixed just fine This cropped up out of nowhere after safely stopping then shutting down the server before a storm. I can't try running a vanilla Minecraft server because this computer cannot handle it. Only bukkit runs, but it runs just fine.
Try resetting your map, (save your current map) and see if it works. It may be a plugin problem (hopefully!)